LOC103479638 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103479638

Desmocollin 2 like; Cadherins are calcium-dependent cell adhesion proteins. (683 aa)

Predicted Functional Partners:

LOC103465321

0.995

ENSPREP00000017890

0.976

ctnnb1

0.863

ENSPREP00000018048

0.862

PKP1

0.862

LOC103472282

0.856

perp

0.847

LOC103479563

0.807

LOC103464197

0.807

LOC103464198

0.807

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000017890	LOC103464197	ENSPREP00000017890	ENSPREP00000029604	Uncharacterized protein.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.985
ENSPREP00000017890	LOC103464198	ENSPREP00000017890	ENSPREP00000029657	Uncharacterized protein.	Si:ch73-74h11.1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.985
ENSPREP00000017890	LOC103465321	ENSPREP00000017890	ENSPREP00000000600	Uncharacterized protein.	Junction plakoglobin a.	0.987
ENSPREP00000017890	LOC103472282	ENSPREP00000017890	ENSPREP00000005903	Uncharacterized protein.	Uncharacterized protein.	0.576
ENSPREP00000017890	LOC103479563	ENSPREP00000017890	ENSPREP00000007437	Uncharacterized protein.	Uncharacterized protein.	0.985
ENSPREP00000017890	LOC103479638	ENSPREP00000017890	ENSPREP00000007346	Uncharacterized protein.	Desmocollin 2 like; Cadherins are calcium-dependent cell adhesion proteins.	0.976
ENSPREP00000017890	PKP1	ENSPREP00000017890	ENSPREP00000029339	Uncharacterized protein.	Plakophilin 1.	0.916
ENSPREP00000017890	ctnnb1	ENSPREP00000017890	ENSPREP00000019419	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.636
ENSPREP00000017890	perp	ENSPREP00000017890	ENSPREP00000012073	Uncharacterized protein.	P53 apoptosis effector related to pmp22.	0.733
ENSPREP00000018048	LOC103464197	ENSPREP00000018048	ENSPREP00000029604	Plakophilin 1b.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.786
ENSPREP00000018048	LOC103464198	ENSPREP00000018048	ENSPREP00000029657	Plakophilin 1b.	Si:ch73-74h11.1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.786
ENSPREP00000018048	LOC103465321	ENSPREP00000018048	ENSPREP00000000600	Plakophilin 1b.	Junction plakoglobin a.	0.813
ENSPREP00000018048	LOC103472282	ENSPREP00000018048	ENSPREP00000005903	Plakophilin 1b.	Uncharacterized protein.	0.576
ENSPREP00000018048	LOC103479563	ENSPREP00000018048	ENSPREP00000007437	Plakophilin 1b.	Uncharacterized protein.	0.786
ENSPREP00000018048	LOC103479638	ENSPREP00000018048	ENSPREP00000007346	Plakophilin 1b.	Desmocollin 2 like; Cadherins are calcium-dependent cell adhesion proteins.	0.862
ENSPREP00000018048	ctnnb1	ENSPREP00000018048	ENSPREP00000019419	Plakophilin 1b.	Catenin (cadherin-associated protein), beta 1.	0.620
ENSPREP00000018048	perp	ENSPREP00000018048	ENSPREP00000012073	Plakophilin 1b.	P53 apoptosis effector related to pmp22.	0.733
LOC103464197	ENSPREP00000017890	ENSPREP00000029604	ENSPREP00000017890	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Uncharacterized protein.	0.985
LOC103464197	ENSPREP00000018048	ENSPREP00000029604	ENSPREP00000018048	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Plakophilin 1b.	0.786
LOC103464197	LOC103464198	ENSPREP00000029604	ENSPREP00000029657	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Si:ch73-74h11.1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.900