dpy30 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dpy30

Dpy-30 histone methyltransferase complex regulatory subunit. (150 aa)

Predicted Functional Partners:

rbbp5

0.999

ash2l

0.999

wdr5

0.995

wdr82

0.962

LOC103465138

0.962

LOC103467472

0.953

LOC103460221

0.949

cxxc1

0.949

setd1a

0.924

LOC103470662

0.924

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103460221	LOC103465138	ENSPREP00000018403	ENSPREP00000008281	CXXC finger protein 1a.	Uncharacterized protein.	0.974
LOC103460221	LOC103470662	ENSPREP00000018403	ENSPREP00000015576	CXXC finger protein 1a.	Uncharacterized protein.	0.933
LOC103460221	ash2l	ENSPREP00000018403	ENSPREP00000022292	CXXC finger protein 1a.	Ash2 like, histone lysine methyltransferase complex subunit.	0.990
LOC103460221	cxxc1	ENSPREP00000018403	ENSPREP00000032218	CXXC finger protein 1a.	CXXC finger protein 1b.	0.545
LOC103460221	dpy30	ENSPREP00000018403	ENSPREP00000007347	CXXC finger protein 1a.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.949
LOC103460221	rbbp5	ENSPREP00000018403	ENSPREP00000014432	CXXC finger protein 1a.	Retinoblastoma binding protein 5.	0.989
LOC103460221	setd1a	ENSPREP00000018403	ENSPREP00000015108	CXXC finger protein 1a.	SET domain containing 1A, histone lysine methyltransferase.	0.933
LOC103460221	wdr5	ENSPREP00000018403	ENSPREP00000032796	CXXC finger protein 1a.	WD repeat domain 5.	0.962
LOC103460221	wdr82	ENSPREP00000018403	ENSPREP00000007134	CXXC finger protein 1a.	WD repeat domain 82.	0.974
LOC103465138	LOC103460221	ENSPREP00000008281	ENSPREP00000018403	Uncharacterized protein.	CXXC finger protein 1a.	0.974
LOC103465138	LOC103467472	ENSPREP00000008281	ENSPREP00000027241	Uncharacterized protein.	Nuclear receptor coactivator 6.	0.460
LOC103465138	LOC103470662	ENSPREP00000008281	ENSPREP00000015576	Uncharacterized protein.	Uncharacterized protein.	0.936
LOC103465138	ash2l	ENSPREP00000008281	ENSPREP00000022292	Uncharacterized protein.	Ash2 like, histone lysine methyltransferase complex subunit.	0.987
LOC103465138	cxxc1	ENSPREP00000008281	ENSPREP00000032218	Uncharacterized protein.	CXXC finger protein 1b.	0.974
LOC103465138	dpy30	ENSPREP00000008281	ENSPREP00000007347	Uncharacterized protein.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.962
LOC103465138	rbbp5	ENSPREP00000008281	ENSPREP00000014432	Uncharacterized protein.	Retinoblastoma binding protein 5.	0.980
LOC103465138	setd1a	ENSPREP00000008281	ENSPREP00000015108	Uncharacterized protein.	SET domain containing 1A, histone lysine methyltransferase.	0.936
LOC103465138	wdr5	ENSPREP00000008281	ENSPREP00000032796	Uncharacterized protein.	WD repeat domain 5.	0.903
LOC103465138	wdr82	ENSPREP00000008281	ENSPREP00000007134	Uncharacterized protein.	WD repeat domain 82.	0.543
LOC103467472	LOC103465138	ENSPREP00000027241	ENSPREP00000008281	Nuclear receptor coactivator 6.	Uncharacterized protein.	0.460