STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam118bFamily with sequence similarity 118 member B. (358 aa)    
Predicted Functional Partners:
Clg18h11orf95
Si:dkey-106g10.7.
   
 0.854
wdr4
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
    
   0.635
FAM219A
Family with sequence similarity 219 member Ab.
      
 0.599
ENSPREP00000026079
Integrator complex subunit 4.
    
 
 0.594
rhbdd3
Rhomboid domain containing 3.
    
 
 0.554
THUMPD2
THUMP domain containing 2.
      
 0.503
bbs9
Bardet-Biedl syndrome 9.
    
 0.483
LOC103458439
Receptor expression-enhancing protein.
    
 
 0.451
pld6
Phospholipase D family, member 6.
    
 0.431
ENSPREP00000014094
NDK domain-containing protein.
   
 0.422
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.