Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rsu1Ras suppressor protein 1. (351 aa)    
Predicted Functional Partners:
parvg
Parvin, gamma.
   
 0.985
ILK
Integrin linked kinase.
   
 0.963
ilk
Uncharacterized protein.
   
 0.963
LOC103461059
LIM and senescent cell antigen-like domains 2.
   
 0.950
LOC103461979
LIM and senescent cell antigen-like domains 2.
   
 0.950
ENSPREP00000031580
LIM zinc-binding domain-containing protein.
   
 0.950
parva
Parvin, alpha a.
   
 0.904
parvb
Parvin, beta.
   
 0.904
ENSPREP00000018298
Uncharacterized protein.
   
 0.886
nudcd1
NudC domain containing 1.
    
   0.835
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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