ufsp2 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ufsp2

Ufm1-specific peptidase 2. (497 aa)

Predicted Functional Partners:

ufm1

0.982

odr4

0.926

uba5

0.831

UFC1

0.807

ufl1

0.778

cdk5rap3

0.744

ddrgk1

0.716

sgsm3

0.670

ccdc86

0.665

nubpl

0.589

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UFC1	cdk5rap3	ENSPREP00000025245	ENSPREP00000019140	Ubiquitin-fold modifier conjugating enzyme 1.	CDK5 regulatory subunit associated protein 3.	0.974
UFC1	ddrgk1	ENSPREP00000025245	ENSPREP00000026059	Ubiquitin-fold modifier conjugating enzyme 1.	Uncharacterized protein.	0.987
UFC1	uba5	ENSPREP00000025245	ENSPREP00000013586	Ubiquitin-fold modifier conjugating enzyme 1.	Ubiquitin-like modifier activating enzyme 5.	0.995
UFC1	ufl1	ENSPREP00000025245	ENSPREP00000002935	Ubiquitin-fold modifier conjugating enzyme 1.	UFM1-specific ligase 1.	0.989
UFC1	ufm1	ENSPREP00000025245	ENSPREP00000017768	Ubiquitin-fold modifier conjugating enzyme 1.	Ubiquitin-fold modifier 1.	0.997
UFC1	ufsp2	ENSPREP00000025245	ENSPREP00000007391	Ubiquitin-fold modifier conjugating enzyme 1.	Ufm1-specific peptidase 2.	0.807
ccdc86	ufsp2	ENSPREP00000007998	ENSPREP00000007391	Si:ch211-217k17.7.	Ufm1-specific peptidase 2.	0.665
cdk5rap3	UFC1	ENSPREP00000019140	ENSPREP00000025245	CDK5 regulatory subunit associated protein 3.	Ubiquitin-fold modifier conjugating enzyme 1.	0.974
cdk5rap3	ddrgk1	ENSPREP00000019140	ENSPREP00000026059	CDK5 regulatory subunit associated protein 3.	Uncharacterized protein.	0.984
cdk5rap3	uba5	ENSPREP00000019140	ENSPREP00000013586	CDK5 regulatory subunit associated protein 3.	Ubiquitin-like modifier activating enzyme 5.	0.781
cdk5rap3	ufl1	ENSPREP00000019140	ENSPREP00000002935	CDK5 regulatory subunit associated protein 3.	UFM1-specific ligase 1.	0.997
cdk5rap3	ufm1	ENSPREP00000019140	ENSPREP00000017768	CDK5 regulatory subunit associated protein 3.	Ubiquitin-fold modifier 1.	0.973
cdk5rap3	ufsp2	ENSPREP00000019140	ENSPREP00000007391	CDK5 regulatory subunit associated protein 3.	Ufm1-specific peptidase 2.	0.744
ddrgk1	UFC1	ENSPREP00000026059	ENSPREP00000025245	Uncharacterized protein.	Ubiquitin-fold modifier conjugating enzyme 1.	0.987
ddrgk1	cdk5rap3	ENSPREP00000026059	ENSPREP00000019140	Uncharacterized protein.	CDK5 regulatory subunit associated protein 3.	0.984
ddrgk1	uba5	ENSPREP00000026059	ENSPREP00000013586	Uncharacterized protein.	Ubiquitin-like modifier activating enzyme 5.	0.650
ddrgk1	ufl1	ENSPREP00000026059	ENSPREP00000002935	Uncharacterized protein.	UFM1-specific ligase 1.	0.989
ddrgk1	ufm1	ENSPREP00000026059	ENSPREP00000017768	Uncharacterized protein.	Ubiquitin-fold modifier 1.	0.973
ddrgk1	ufsp2	ENSPREP00000026059	ENSPREP00000007391	Uncharacterized protein.	Ufm1-specific peptidase 2.	0.716
nubpl	sgsm3	ENSPREP00000003192	ENSPREP00000000887	Nucleotide binding protein-like.	Small G protein signaling modulator 3.	0.704