STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479563Uncharacterized protein. (990 aa)    
Predicted Functional Partners:
LOC103465321
Junction plakoglobin a.
   
 0.990
ENSPREP00000017890
Uncharacterized protein.
   
 0.985
PKP1
Plakophilin 1.
   
 0.983
dsp
Desmoplakin a.
   
 0.946
LOC103464197
Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
  
  
 
0.905
LOC103464198
Si:ch73-74h11.1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
     
 
0.900
LOC103466878
Keratin 5; Belongs to the intermediate filament family.
   
 0.825
LOC103464941
Keratin 4; Belongs to the intermediate filament family.
   
 
 0.808
LOC103466879
Keratin 8; Belongs to the intermediate filament family.
   
 
 0.808
LOC103479638
Desmocollin 2 like; Cadherins are calcium-dependent cell adhesion proteins.
   
 0.807
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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