STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469262Parvalbumin 4; Belongs to the parvalbumin family. (109 aa)    
Predicted Functional Partners:
LOC103475843
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.661
cask
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.661
ENSPREP00000027150
Uncharacterized protein.
   
 0.564
LOC103475562
Doublecortin-like kinase 1a.
   
 0.498
LOC103474972
Doublecortin-like kinase 1b.
   
 0.498
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.497
tmod1
Tropomodulin 1.
   
 
 0.486
txnl1
Thioredoxin-like 1.
      
 0.474
LOC103459892
Calcium/calmodulin-dependent protein kinase II alpha.
    
 0.424
LOC103469495
Calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 2.
    
 0.424
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.