STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
criptCysteine-rich PDZ-binding protein. (101 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.906
phf5a
PHD finger protein 5A.
   
   0.832
sf3b2
Splicing factor 3b, subunit 2.
    
   0.827
rnf113a
Ring finger protein 113A.
    
   0.827
sf3b1
Splicing factor 3b, subunit 1.
    
   0.827
sf3b3
Splicing factor 3b, subunit 3.
    
   0.827
prpf8
Pre-mRNA processing factor 8.
    
   0.827
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
    
 
 0.687
cwc15
CWC15 spliceosome associated protein homolog.
   
   0.683
Snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
   0.680
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.