STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
neurl1bNeuralized E3 ubiquitin protein ligase 1B. (572 aa)    
Predicted Functional Partners:
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.877
plekhf2
Pleckstrin homology domain containing, family F (with FYVE domain) member 2.
      
 0.730
sqstm1
Sequestosome 1.
   
 
 0.677
nbr1
NBR1 autophagy cargo receptor a.
   
 
 0.677
ENSPREP00000017127
GSAP-16 domain-containing protein.
   
 
 0.677
fam43a
Family with sequence similarity 43 member A.
      
 0.670
naa30
N(alpha)-acetyltransferase 30, NatC catalytic subunit.
      
 0.670
LOC103467039
Epsin 3b.
    
 
 0.638
ENSPREP00000000770
ENTH domain-containing protein.
    
 
 0.638
LOC103468803
Epsin 3a.
    
 
 0.638
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.