STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465706Si:dkey-10o6.2; Belongs to the iron/ascorbate-dependent oxidoreductase family. (305 aa)    
Predicted Functional Partners:
aasdh
Aminoadipate-semialdehyde dehydrogenase.
   
 
 0.878
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.655
ADRM1
Adhesion regulating molecule 1.
    
 
 0.623
LOC103478144
Proteasome 26S subunit, non-ATPase 4b.
    
 
 0.623
LOC103472718
Proteasome 26S subunit, non-ATPase 4a.
    
 
 0.623
Adrm1
Adhesion regulating molecule 1.
    
 
 0.623
pgap1
Post-GPI attachment to proteins 1.
    
   0.561
LOC103456937
Carrier domain-containing protein.
    
 0.540
LOC103456785
Si:dkey-61p9.11.
    
 0.540
fasn
Coiled-coil domain containing 57.
    
 0.540
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.