STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000007467Small EDRK-rich factor 2. (68 aa)    
Predicted Functional Partners:
tmem134
Transmembrane protein 134.
      
 0.786
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
   0.785
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
    0.750
atp5f1e
ATP synthase F1 subunit epsilon.
   
    0.713
Rpl24
Ribosomal protein L24.
   
    0.709
rplp1
Ribosomal protein, large, P1.
   
  
 0.701
Rpl31
Ribosomal protein L31.
   
  
 0.683
rpl28
Ribosomal protein L28.
   
  
 0.678
rpl18a
Ribosomal protein L18a.
   
    0.675
tma7
Uncharacterized protein.
   
    0.668
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.