STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103464490V-ski avian sarcoma viral oncogene homolog b. (677 aa)    
Predicted Functional Partners:
LOC103473773
Mothers against decapentaplegic homolog.
   
 0.791
LOC103477474
Mothers against decapentaplegic homolog.
   
 0.791
SMAD4
Mothers against decapentaplegic homolog.
   
 0.791
ncor2
Nuclear receptor corepressor 2.
   
 0.634
ncor1
Nuclear receptor corepressor 1.
   
 0.634
LOC103471035
Mothers against decapentaplegic homolog.
   
 0.630
smad2
Mothers against decapentaplegic homolog.
   
 0.630
ENSPREP00000009749
MH1 domain-containing protein.
   
 0.630
LOC103461502
Mothers against decapentaplegic homolog 2-like.
   
 0.630
SMAD3
Mothers against decapentaplegic homolog.
   
 0.630
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.