STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DNAJC13DnaJ heat shock protein family (Hsp40) member C13. (2232 aa)    
Predicted Functional Partners:
stx8
Syntaxin 8.
    
 
 0.792
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
   0.790
gak
Cyclin G associated kinase.
   
  
 0.772
usp30
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.763
atxn2
Ataxin 2.
      
 0.746
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.746
synj1
Synaptojanin 1.
      
 0.730
LOC103465720
RIC3 domain-containing protein.
      
 0.728
pink1
PTEN induced kinase 1.
      
 0.694
zcchc2
Zinc finger, CCHC domain containing 2.
   
  
 0.687
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.