STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC3Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (415 aa)    
Predicted Functional Partners:
LOC103478412
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
0.967
LOC103464268
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
0.963
LOC103459210
Decorin; May affect the rate of fibrils formation.
     
 0.687
ptn
Pleiotrophin.
    
 
 0.670
aldob
Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.
      
 0.646
ext2
Exostosin glycosyltransferase 2; Belongs to the glycosyltransferase 47 family.
     
 0.588
gdnf
Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.
      
 0.549
gpc2
Glypican 2; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
     
 0.549
LOC103479401
Glypican 5c; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
     
 0.543
ENSPREP00000031676
Glypican 5b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
     
 0.543
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.