STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smad2Mothers against decapentaplegic homolog. (410 aa)    
Predicted Functional Partners:
LOC103477474
Mothers against decapentaplegic homolog.
  
0.906
LOC103473773
Mothers against decapentaplegic homolog.
  
0.905
SMAD4
Mothers against decapentaplegic homolog.
   
0.903
LOC103482434
Forkhead box H1.
    
 0.861
ski
V-ski avian sarcoma viral oncogene homolog a.
   
 0.834
Skil
SKI-like proto-oncogene a.
   
 0.833
sp1
Sp1 transcription factor.
    
 0.800
LOC103471035
Mothers against decapentaplegic homolog.
  
0.795
smad9
Mothers against decapentaplegic homolog.
  
0.795
smad1
Mothers against decapentaplegic homolog.
  
0.795
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.