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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ergic1Endoplasmic reticulum-golgi intermediate compartment 1. (291 aa)    
Predicted Functional Partners:
gtpbp3
GTP binding protein 3, mitochondrial.
  
 0.928
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.768
surf4
Surfeit 4.
   
 
 0.595
yars1
Tyrosine--tRNA ligase.
  
  
 0.591
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
  
 0.486
oxa1l
OXA1L mitochondrial inner membrane protein.
  
  
 0.486
LOC103471791
Cytochrome c oxidase assembly factor COX18.
  
  
 0.486
lman1
Lectin, mannose-binding, 1.
   
  
 0.483
arrdc3
Arrestin domain containing 3a.
      
 0.468
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
  
 0.464
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.