STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ergic1Endoplasmic reticulum-golgi intermediate compartment 1. (291 aa)    
Predicted Functional Partners:
gtpbp3
GTP binding protein 3, mitochondrial.
  
 0.895
surf4
Surfeit 4.
    
 
 0.876
ergic3
ERGIC and golgi 3.
    
 
 0.811
lman1
Lectin, mannose-binding, 1.
   
  
 0.669
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.658
cenpv
Centromere protein V.
      
 0.596
trappc8
Trafficking protein particle complex 8.
      
 0.584
cnih4
Cornichon family AMPA receptor auxiliary protein 4.
    
 
 0.578
LOC103460979
Coatomer protein complex, subunit gamma 2.
   
   0.575
trappc11
Trafficking protein particle complex 11.
      
 0.572
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.