STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
afg1lAFG1 like ATPase b. (467 aa)    
Predicted Functional Partners:
gucd1
Guanylyl cyclase domain containing 1.
      
 0.585
upb1
Ureidopropionase, beta.
      
 0.584
dtnbp1
Dystrobrevin binding protein 1b.
      
 0.523
mrps9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
   0.519
znf280d
Zinc finger protein 280D.
      
 0.506
dmgdh
Dimethylglycine dehydrogenase.
      
 0.503
ice2
Interactor of little elongator complex ELL subunit 2.
      
 0.499
bcas3
BCAS3 microtubule associated cell migration factor.
      
 0.498
sec63
SEC63 homolog, protein translocation regulator.
      
 0.474
mkln1
Muskelin 1, intracellular mediator containing kelch motifs.
      
 0.463
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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