STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cir1Corepressor interacting with RBPJ, 1. (432 aa)    
Predicted Functional Partners:
snw1
SNW domain containing 1.
   
 
 0.883
Cwc25
Cir_N domain-containing protein.
   
 
 0.870
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 
 0.808
nkap
NFKB activating protein.
   
 
 0.728
prpf8
Pre-mRNA processing factor 8.
    
 
 0.702
rbm22
RNA binding motif protein 22.
    
 
 0.680
frg1
FSHD region gene 1.
   
 
 0.630
cwc15
CWC15 spliceosome associated protein homolog.
   
   0.604
cwc22
CWC22 spliceosome associated protein homolog.
   
   0.602
yju2
YJU2 splicing factor homolog.
   
   0.572
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.