clg9h12orf49 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

clg9h12orf49

Zgc:110063. (234 aa)

Predicted Functional Partners:

mbtps1

0.939

mpc2

0.606

gnptab

0.589

fam120b

0.537

LOC103476647

0.523

tmem41a

0.523

ubiad1

0.521

agps

0.483

pex7

0.464

fdft1

0.407

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103476647	agps	ENSPREP00000010064	ENSPREP00000007958	Uncharacterized protein.	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	0.467
LOC103476647	clg9h12orf49	ENSPREP00000010064	ENSPREP00000007605	Uncharacterized protein.	Zgc:110063.	0.523
LOC103476647	mbtps1	ENSPREP00000010064	ENSPREP00000000957	Uncharacterized protein.	Membrane-bound transcription factor peptidase, site 1.	0.503
LOC103476647	mpc2	ENSPREP00000010064	ENSPREP00000014825	Uncharacterized protein.	Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family.	0.530
LOC103476647	ubiad1	ENSPREP00000010064	ENSPREP00000014937	Uncharacterized protein.	UbiA prenyltransferase domain containing 1.	0.416
agps	LOC103476647	ENSPREP00000007958	ENSPREP00000010064	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Uncharacterized protein.	0.467
agps	clg9h12orf49	ENSPREP00000007958	ENSPREP00000007605	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Zgc:110063.	0.483
agps	mpc2	ENSPREP00000007958	ENSPREP00000014825	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family.	0.497
agps	pex7	ENSPREP00000007958	ENSPREP00000020948	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Peroxisomal biogenesis factor 7.	0.966
agps	tmem41a	ENSPREP00000007958	ENSPREP00000013990	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Transmembrane protein 41aa.	0.467
clg9h12orf49	LOC103476647	ENSPREP00000007605	ENSPREP00000010064	Zgc:110063.	Uncharacterized protein.	0.523
clg9h12orf49	agps	ENSPREP00000007605	ENSPREP00000007958	Zgc:110063.	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	0.483
clg9h12orf49	fam120b	ENSPREP00000007605	ENSPREP00000014659	Zgc:110063.	Family with sequence similarity 120B.	0.537
clg9h12orf49	fdft1	ENSPREP00000007605	ENSPREP00000029902	Zgc:110063.	Farnesyl-diphosphate farnesyltransferase 1.	0.407
clg9h12orf49	gnptab	ENSPREP00000007605	ENSPREP00000033853	Zgc:110063.	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta.	0.589
clg9h12orf49	mbtps1	ENSPREP00000007605	ENSPREP00000000957	Zgc:110063.	Membrane-bound transcription factor peptidase, site 1.	0.939
clg9h12orf49	mpc2	ENSPREP00000007605	ENSPREP00000014825	Zgc:110063.	Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family.	0.606
clg9h12orf49	pex7	ENSPREP00000007605	ENSPREP00000020948	Zgc:110063.	Peroxisomal biogenesis factor 7.	0.464
clg9h12orf49	tmem41a	ENSPREP00000007605	ENSPREP00000013990	Zgc:110063.	Transmembrane protein 41aa.	0.523
clg9h12orf49	ubiad1	ENSPREP00000007605	ENSPREP00000014937	Zgc:110063.	UbiA prenyltransferase domain containing 1.	0.521