STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471111Tripartite motif containing 105. (479 aa)    
Predicted Functional Partners:
p2rx2
P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.
      
 0.572
trim45
Tripartite motif containing 45.
      
 0.531
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
  
 0.518
isg20l2
Interferon stimulated exonuclease gene 20 like 2.
    
 
 0.477
LOC103470237
Guanine nucleotide binding protein (G protein), alpha 14a.
      
 0.463
man2b2
Alpha-mannosidase.
      
 0.410
LOC103460190
Adenosine deaminase RNA specific B1b.
   
  
 0.407
LOC103477529
Uncharacterized protein.
   
  
 0.407
LOC103459939
Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
    
 0.403
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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