STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pum1Pumilio RNA-binding family member 1. (1163 aa)    
Predicted Functional Partners:
LOC103478033
Cytochrome c oxidase copper chaperone COX17.
    
 
 0.819
LOC103471867
Nanos homolog 1; Belongs to the nanos family.
   
 
 0.784
NANOS1
Nanos C2HC-type zinc finger 1; Belongs to the nanos family.
   
 
 0.784
LOC103461037
RAN binding protein 2.
   
   0.776
LOC103459027
Zgc:163014.
   
   0.748
coq5
2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial; Methyltransferase required for the conversion of 2- polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl- 6-methoxy-1,4-benzoquinol (DMQH2).
    
 
 0.742
yars1
Tyrosine--tRNA ligase.
    
 
 0.741
mrpl19
Mitochondrial ribosomal protein L19.
    
 
 0.729
cnot1
CCR4-NOT transcription complex, subunit 1.
   
 
 0.724
ENSPREP00000023296
Uncharacterized protein.
    
 
 0.720
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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