mecr protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mecr

Mitochondrial trans-2-enoyl-CoA reductase. (367 aa)

Predicted Functional Partners:

oxsm

0.963

acox3

0.954

acadsb

0.954

acads

0.954

acadm

0.950

acaa2

0.949

fasn

0.944

echs1

0.944

acox1

0.933

olah

0.932

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
acaa2	acadm	ENSPREP00000016912	ENSPREP00000027231	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-CoA dehydrogenase medium chain.	0.990
acaa2	acads	ENSPREP00000016912	ENSPREP00000020580	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-CoA dehydrogenase short chain.	0.974
acaa2	acadsb	ENSPREP00000016912	ENSPREP00000010670	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-CoA dehydrogenase short/branched chain.	0.974
acaa2	acox1	ENSPREP00000016912	ENSPREP00000029304	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.977
acaa2	acox3	ENSPREP00000016912	ENSPREP00000004131	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.980
acaa2	echs1	ENSPREP00000016912	ENSPREP00000031969	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	Enoyl CoA hydratase, short chain, 1, mitochondrial; Belongs to the enoyl-CoA hydratase/isomerase family.	0.912
acaa2	fasn	ENSPREP00000016912	ENSPREP00000005709	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	Coiled-coil domain containing 57.	0.604
acaa2	mecr	ENSPREP00000016912	ENSPREP00000007639	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	Mitochondrial trans-2-enoyl-CoA reductase.	0.949
acaa2	oxsm	ENSPREP00000016912	ENSPREP00000019728	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.540
acadm	acaa2	ENSPREP00000027231	ENSPREP00000016912	Acyl-CoA dehydrogenase medium chain.	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.990
acadm	acads	ENSPREP00000027231	ENSPREP00000020580	Acyl-CoA dehydrogenase medium chain.	Acyl-CoA dehydrogenase short chain.	0.953
acadm	acadsb	ENSPREP00000027231	ENSPREP00000010670	Acyl-CoA dehydrogenase medium chain.	Acyl-CoA dehydrogenase short/branched chain.	0.954
acadm	acox1	ENSPREP00000027231	ENSPREP00000029304	Acyl-CoA dehydrogenase medium chain.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.964
acadm	acox3	ENSPREP00000027231	ENSPREP00000004131	Acyl-CoA dehydrogenase medium chain.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.956
acadm	echs1	ENSPREP00000027231	ENSPREP00000031969	Acyl-CoA dehydrogenase medium chain.	Enoyl CoA hydratase, short chain, 1, mitochondrial; Belongs to the enoyl-CoA hydratase/isomerase family.	0.984
acadm	fasn	ENSPREP00000027231	ENSPREP00000005709	Acyl-CoA dehydrogenase medium chain.	Coiled-coil domain containing 57.	0.528
acadm	mecr	ENSPREP00000027231	ENSPREP00000007639	Acyl-CoA dehydrogenase medium chain.	Mitochondrial trans-2-enoyl-CoA reductase.	0.950
acadm	oxsm	ENSPREP00000027231	ENSPREP00000019728	Acyl-CoA dehydrogenase medium chain.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.725
acads	acaa2	ENSPREP00000020580	ENSPREP00000016912	Acyl-CoA dehydrogenase short chain.	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.974
acads	acadm	ENSPREP00000020580	ENSPREP00000027231	Acyl-CoA dehydrogenase short chain.	Acyl-CoA dehydrogenase medium chain.	0.953