STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbrg1Transforming growth factor beta regulator 1. (546 aa)    
Predicted Functional Partners:
cops2
COP9 signalosome subunit 2.
   
  
 0.798
tsku
Tsukushi small leucine rich proteoglycan homolog (Xenopus laevis).
      
 0.758
kntc1
Kinetochore associated 1.
      
 0.758
fbxo3
F-box protein 3.
      
 0.758
rbbp5
Retinoblastoma binding protein 5.
    
 0.756
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.743
ENSPREP00000031039
Rho guanine nucleotide exchange factor (GEF) 17.
   
  
 0.731
chfr
Checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase.
     
 0.728
LOC103475867
Lysine (K)-specific demethylase 6B, b.
   
 0.703
LOC103475798
Lysine (K)-specific demethylase 6A, like.
   
 0.703
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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