STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ostm1Osteoclastogenesis associated transmembrane protein 1. (313 aa)    
Predicted Functional Partners:
clcn6
Chloride channel 6; Belongs to the chloride channel (TC 2.A.49) family.
   
 0.952
clcn7
Chloride channel protein.
   
 0.952
sec63
SEC63 homolog, protein translocation regulator.
      
 0.681
LOC103472845
Chloride channel protein.
   
 0.670
ENSPREP00000004540
Uncharacterized protein.
   
 0.670
ENSPREP00000014677
Uncharacterized protein.
   
 0.670
Clcn2
4Fe-4S ferredoxin-type domain-containing protein.
   
 0.670
ENSPREP00000014757
Uncharacterized protein.
   
 0.670
clcnka
Chloride channel K.
   
 0.670
clcn1
Chloride channel protein.
   
 0.670
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.