sall2 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sall2

Si:ch211-212k18.5. (1210 aa)

Predicted Functional Partners:

abcb6

0.640

ENSPREP00000030322

0.550

bsx

0.533

wdr73

0.507

rbbp4

0.507

RBBP7

0.507

smoc1

0.474

LOC103478462

0.434

LOC103472702

0.426

ENSPREP00000018784

0.425

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000018784	RBBP7	ENSPREP00000018784	ENSPREP00000032935	Uncharacterized protein.	RB binding protein 7, chromatin remodeling factor.	0.901
ENSPREP00000018784	rbbp4	ENSPREP00000018784	ENSPREP00000032501	Uncharacterized protein.	Retinoblastoma binding protein 4.	0.901
ENSPREP00000018784	sall2	ENSPREP00000018784	ENSPREP00000007720	Uncharacterized protein.	Si:ch211-212k18.5.	0.425
ENSPREP00000018784	wdr73	ENSPREP00000018784	ENSPREP00000027306	Uncharacterized protein.	WD repeat domain 73.	0.901
ENSPREP00000030322	abcb6	ENSPREP00000030322	ENSPREP00000014933	Uncharacterized protein.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.553
ENSPREP00000030322	sall2	ENSPREP00000030322	ENSPREP00000007720	Uncharacterized protein.	Si:ch211-212k18.5.	0.550
LOC103472702	sall2	ENSPREP00000029041	ENSPREP00000007720	Pre-B-cell leukemia homeobox interacting protein 1a.	Si:ch211-212k18.5.	0.426
LOC103478462	sall2	ENSPREP00000011609	ENSPREP00000007720	Uncharacterized protein.	Si:ch211-212k18.5.	0.434
RBBP7	ENSPREP00000018784	ENSPREP00000032935	ENSPREP00000018784	RB binding protein 7, chromatin remodeling factor.	Uncharacterized protein.	0.901
RBBP7	rbbp4	ENSPREP00000032935	ENSPREP00000032501	RB binding protein 7, chromatin remodeling factor.	Retinoblastoma binding protein 4.	0.900
RBBP7	sall2	ENSPREP00000032935	ENSPREP00000007720	RB binding protein 7, chromatin remodeling factor.	Si:ch211-212k18.5.	0.507
abcb6	ENSPREP00000030322	ENSPREP00000014933	ENSPREP00000030322	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	Uncharacterized protein.	0.553
abcb6	sall2	ENSPREP00000014933	ENSPREP00000007720	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	Si:ch211-212k18.5.	0.640
abcb6	smoc1	ENSPREP00000014933	ENSPREP00000013380	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	SPARC related modular calcium binding 1.	0.473
bsx	sall2	ENSPREP00000020504	ENSPREP00000007720	Brain-specific homeobox.	Si:ch211-212k18.5.	0.533
rbbp4	ENSPREP00000018784	ENSPREP00000032501	ENSPREP00000018784	Retinoblastoma binding protein 4.	Uncharacterized protein.	0.901
rbbp4	RBBP7	ENSPREP00000032501	ENSPREP00000032935	Retinoblastoma binding protein 4.	RB binding protein 7, chromatin remodeling factor.	0.900
rbbp4	sall2	ENSPREP00000032501	ENSPREP00000007720	Retinoblastoma binding protein 4.	Si:ch211-212k18.5.	0.507
sall2	ENSPREP00000018784	ENSPREP00000007720	ENSPREP00000018784	Si:ch211-212k18.5.	Uncharacterized protein.	0.425
sall2	ENSPREP00000030322	ENSPREP00000007720	ENSPREP00000030322	Si:ch211-212k18.5.	Uncharacterized protein.	0.550