STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nptx2Neuronal pentraxin 2a. (449 aa)    
Predicted Functional Partners:
TAFA5
TAFA chemokine like family member 5a.
      
 0.768
asic2
Acid-sensing (proton-gated) ion channel 2; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
      
 0.752
npas4
Neuronal PAS domain protein 4a.
      
 0.714
LOC103468547
Parvalbumin 6; Belongs to the parvalbumin family.
     
 0.612
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
    
 
 0.599
LOC103470494
Uncharacterized protein.
    
 
 0.599
rnf2
Ring finger protein 2.
    
 0.598
RING1
Ring finger protein 1.
    
 0.598
LOC103460734
Uncharacterized protein.
      
 0.567
tmem25
Ig-like domain-containing protein.
   
  
 0.539
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.