STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc17Zinc finger, CCHC domain containing 17. (304 aa)    
Predicted Functional Partners:
LOC103482453
UTP14C small subunit processome component.
   
 0.858
utp3
UTP3 small subunit processome component.
   
 0.856
ddx49
DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.
   
 0.845
slu7
SLU7 homolog, splicing factor.
   
 0.840
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.835
utp25
UTP25 small subunit processor component.
   
 0.833
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.830
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.829
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.829
nol6
Nucleolar protein 6.
   
 0.827
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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