Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zcchc17Zinc finger, CCHC domain containing 17. (304 aa)    
Predicted Functional Partners:
LOC103482453
UTP14C small subunit processome component.
   
 0.847
slu7
SLU7 homolog, splicing factor.
   
 0.832
utp3
UTP3 small subunit processome component.
   
 0.831
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.826
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.817
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.812
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.810
ddx49
DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.
   
 0.810
pnn
Pinin, desmosome associated protein.
   
 
 0.808
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.803
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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