STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccnb1ip1Cyclin B1 interacting protein 1. (239 aa)    
Predicted Functional Partners:
msh4
MutS homolog 4.
      
 0.581
fancm
Uncharacterized protein.
      
 0.548
ENSPREP00000031846
Cyclin D binding myb-like transcription factor 1.
      
 0.526
mlh1
MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).
      
 0.520
hfm1
Helicase for meiosis 1.
      
 0.503
tex11
Testis expressed 11.
      
 0.503
mlh3
MutL homolog 3 (E. coli).
      
 0.503
mus81
MUS81 structure-specific endonuclease subunit.
      
 0.503
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.470
prim2
DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands.
      
 0.468
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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