STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103460653Si:dkey-16l2.16. (209 aa)    
Predicted Functional Partners:
dennd1a
DENN/MADD domain containing 1A.
    
 0.903
rab35
RAB35, member RAS oncogene family b.
  
  
 
0.901
ift88
Intraflagellar transport 88 homolog.
    
 0.879
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.879
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.873
ift81
Intraflagellar transport 81 homolog.
    
 0.871
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.866
cluap1
Clusterin associated protein 1.
    
 0.849
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.846
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.845
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.