STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474776Matrix metallopeptidase 20a (enamelysin). (452 aa)    
Predicted Functional Partners:
LOC103468846
TIMP metallopeptidase inhibitor 2b.
   
 0.614
LOC103481516
TIMP metallopeptidase inhibitor 2a.
   
 0.614
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.607
LOC103478877
Matrix metallopeptidase 14b (membrane-inserted).
  
0.514
LOC103462238
Matrix metallopeptidase 15b.
  
0.507
LOC103459210
Decorin; May affect the rate of fibrils formation.
   
 0.504
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 1.
    
 0.468
LOC103466132
CD44 molecule (Indian blood group) b.
   
 0.466
LOC103474065
Matrix metallopeptidase 11.
  
0.465
LOC103469842
Matrix metallopeptidase 11a.
  
0.449
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.