STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474776Matrix metallopeptidase 20a (enamelysin). (452 aa)    
Predicted Functional Partners:
LOC103481516
TIMP metallopeptidase inhibitor 2a.
   
 0.658
LOC103468846
TIMP metallopeptidase inhibitor 2b.
   
 0.657
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.590
LOC103466132
CD44 molecule (Indian blood group) b.
    
 0.569
LOC103462238
Matrix metallopeptidase 15b.
   
 0.566
LOC103478877
Matrix metallopeptidase 14b (membrane-inserted).
   
 0.566
LOC103459210
Decorin; May affect the rate of fibrils formation.
   
 0.554
LOC103474065
Matrix metallopeptidase 11.
  
 
0.545
LOC103471128
Heparin-binding EGF-like growth factor a.
    
 0.540
ENSPREP00000000894
Matrix metallopeptidase 17b.
  
 
0.519
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.