STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX41DEAD-box helicase 41. (614 aa)    
Predicted Functional Partners:
sting1
Transmembrane protein 173.
    
 0.987
nkap
NFKB activating protein.
    
 0.971
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.947
slu7
SLU7 homolog, splicing factor.
    
  0.945
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.934
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.925
fam32a
Family with sequence similarity 32 member A.
    
 0.914
cwc22
CWC22 spliceosome associated protein homolog.
    
  0.908
sde2
Uncharacterized protein.
    
 0.894
ppwd1
Peptidylprolyl isomerase domain and WD repeat containing 1.
   
 0.892
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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