STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX41DEAD-box helicase 41. (614 aa)    
Predicted Functional Partners:
ppwd1
Peptidylprolyl isomerase domain and WD repeat containing 1.
   
 0.853
nkap
NFKB activating protein.
    
  0.838
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 0.730
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.716
dhx36
DEAH (Asp-Glu-Ala-His) box polypeptide 36.
   
 0.703
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.692
DDX39A
DExD-box helicase 39A.
  
0.684
ddx39a
Uncharacterized protein.
  
0.684
eprs1
Glutamyl-prolyl-tRNA synthetase.
      
 0.681
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.680
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.