STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dclk3Doublecortin-like kinase 3. (819 aa)    
Predicted Functional Partners:
crym
Crystallin, mu.
   
  
 0.644
numa1
Calponin-homology (CH) domain-containing protein.
    
 0.606
thoc6
THO complex 6.
      
 0.593
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 
 0.573
ENSPREP00000014094
NDK domain-containing protein.
   
 
 0.545
paqr5
Progestin and adipoQ receptor family member Va.
      
 0.537
paqr6
Progestin and adipoQ receptor family member VI.
      
 0.537
supt3h
SPT3 homolog, SAGA and STAGA complex component.
   
  
 0.528
btbd9
BTB (POZ) domain containing 9.
    
 
 0.524
nedd1
NEDD1 gamma-tubulin ring complex targeting factor.
      
 0.511
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.