cdv3 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cdv3

Carnitine deficiency-associated gene expressed in ventricle 3. (232 aa)

Predicted Functional Partners:

rnf7

0.651

tfdp1

0.582

pa2g4

0.516

LOC103467366

0.516

ENSPREP00000007467

0.513

dap

0.503

trub1

0.435

dkc1

0.435

LOC103474492

0.431

edf1

0.425

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000007467	cdv3	ENSPREP00000007467	ENSPREP00000007810	Small EDRK-rich factor 2.	Carnitine deficiency-associated gene expressed in ventricle 3.	0.513
ENSPREP00000007467	dap	ENSPREP00000007467	ENSPREP00000024406	Small EDRK-rich factor 2.	Death-associated protein.	0.524
LOC103467366	cdv3	ENSPREP00000030837	ENSPREP00000007810	Peptidase_M24 domain-containing protein.	Carnitine deficiency-associated gene expressed in ventricle 3.	0.516
LOC103467366	dkc1	ENSPREP00000030837	ENSPREP00000005982	Peptidase_M24 domain-containing protein.	Dyskeratosis congenita 1, dyskerin.	0.774
LOC103467366	trub1	ENSPREP00000030837	ENSPREP00000004762	Peptidase_M24 domain-containing protein.	TruB pseudouridine (psi) synthase family member 1.	0.639
LOC103474492	cdv3	ENSPREP00000019222	ENSPREP00000007810	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Carnitine deficiency-associated gene expressed in ventricle 3.	0.431
cdv3	ENSPREP00000007467	ENSPREP00000007810	ENSPREP00000007467	Carnitine deficiency-associated gene expressed in ventricle 3.	Small EDRK-rich factor 2.	0.513
cdv3	LOC103467366	ENSPREP00000007810	ENSPREP00000030837	Carnitine deficiency-associated gene expressed in ventricle 3.	Peptidase_M24 domain-containing protein.	0.516
cdv3	LOC103474492	ENSPREP00000007810	ENSPREP00000019222	Carnitine deficiency-associated gene expressed in ventricle 3.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.431
cdv3	dap	ENSPREP00000007810	ENSPREP00000024406	Carnitine deficiency-associated gene expressed in ventricle 3.	Death-associated protein.	0.503
cdv3	dkc1	ENSPREP00000007810	ENSPREP00000005982	Carnitine deficiency-associated gene expressed in ventricle 3.	Dyskeratosis congenita 1, dyskerin.	0.435
cdv3	edf1	ENSPREP00000007810	ENSPREP00000024757	Carnitine deficiency-associated gene expressed in ventricle 3.	Endothelial differentiation-related factor 1.	0.425
cdv3	pa2g4	ENSPREP00000007810	ENSPREP00000018462	Carnitine deficiency-associated gene expressed in ventricle 3.	Proliferation-associated 2G4, a.	0.516
cdv3	rnf7	ENSPREP00000007810	ENSPREP00000027127	Carnitine deficiency-associated gene expressed in ventricle 3.	Ring finger protein 7.	0.651
cdv3	tfdp1	ENSPREP00000007810	ENSPREP00000014099	Carnitine deficiency-associated gene expressed in ventricle 3.	Transcription factor.	0.582
cdv3	trub1	ENSPREP00000007810	ENSPREP00000004762	Carnitine deficiency-associated gene expressed in ventricle 3.	TruB pseudouridine (psi) synthase family member 1.	0.435
dap	ENSPREP00000007467	ENSPREP00000024406	ENSPREP00000007467	Death-associated protein.	Small EDRK-rich factor 2.	0.524
dap	cdv3	ENSPREP00000024406	ENSPREP00000007810	Death-associated protein.	Carnitine deficiency-associated gene expressed in ventricle 3.	0.503
dkc1	LOC103467366	ENSPREP00000005982	ENSPREP00000030837	Dyskeratosis congenita 1, dyskerin.	Peptidase_M24 domain-containing protein.	0.774
dkc1	cdv3	ENSPREP00000005982	ENSPREP00000007810	Dyskeratosis congenita 1, dyskerin.	Carnitine deficiency-associated gene expressed in ventricle 3.	0.435