STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478963Si:ch211-269e2.1. (1097 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.984
LOC103465732
Structural maintenance of chromosomes protein.
   
 0.976
smc1a
Structural maintenance of chromosomes protein.
   
 0.976
LOC103472890
RAD21 cohesin complex component b.
   
 0.969
LOC103467726
RAD21 cohesin complex component like 1.
   
 0.969
LOC103478347
RAD21 cohesin complex component a.
   
 0.969
espl1
Extra spindle pole bodies like 1, separase.
   
 0.969
rec8
REC8 meiotic recombination protein b.
   
 0.892
pds5a
PDS5 cohesin associated factor A.
   
 0.871
pds5b
PDS5 cohesin associated factor B.
   
 0.871
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.