STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rai1Retinoic acid induced 1. (2202 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
    
 0.652
hmg20a
High mobility group 20A.
   
 0.652
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.629
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.628
bbs4
Bardet-Biedl syndrome 4.
    
 0.627
sbf1
SET binding factor 1.
   
 
 0.622
sbf2
SET binding factor 2.
   
 
 0.622
ift81
Intraflagellar transport 81 homolog.
    
 
 0.600
bbs9
Bardet-Biedl syndrome 9.
      
 0.599
amacr
Alpha-methylacyl-CoA racemase.
      
 0.596
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.