STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rap1bUncharacterized protein. (231 aa)    
Predicted Functional Partners:
LOC103458407
Rap guanine nucleotide exchange factor (GEF) 4.
   
 0.912
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
    
 0.903
LOC103473427
Rap guanine nucleotide exchange factor (GEF) 1b.
    
 0.837
apbb1ip
Amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein.
    
 0.813
APBB1IP
Uncharacterized protein.
    
 0.813
raf1
Raf-1 proto-oncogene, serine/threonine kinase a.
    
 0.810
braf
B-Raf proto-oncogene, serine/threonine kinase.
    
 0.810
LOC103469576
A-Raf proto-oncogene, serine/threonine kinase.
    
 0.810
LOC103467797
Rap guanine nucleotide exchange factor (GEF) 3.
    
 0.808
afdn
Afadin, adherens junction formation factor a.
    
 
 0.762
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.