STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxd4Homeobox D4a. (232 aa)    
Predicted Functional Partners:
hoxd3
Homeobox D3a.
  
  
0.946
hoxc4
Homeobox C4a.
  
 
0.689
chd9
Chromodomain helicase DNA binding protein 9.
   
 
 0.650
hoxc6
Homeobox C6a.
   
 
0.643
LOC103468209
Homeobox B4a.
  
  
0.640
hoxb5
Homeobox B5b.
   
 
0.631
LOC103468208
Homeobox domain-containing protein.
  
 
0.629
HOXB6
Homeobox B6.
   
 
0.611
LOC103472195
Homeobox A4.
  
 
0.607
ENSPREP00000009941
Homeobox domain-containing protein.
  
 
0.600
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.