Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxd4Homeobox D4a. (232 aa)    
Predicted Functional Partners:
hoxd3
Homeobox D3a.
   
  
 0.959
hoxc5
Homeobox C5a.
   
 
 0.822
hoxc4
Homeobox C4a.
   
 
 0.791
HOXB6
Homeobox B6.
   
 
 0.715
LOC103468207
Homeobox domain-containing protein.
   
 
 0.711
LOC103468209
Homeobox B4a.
   
   0.708
hoxc6
Homeobox C6a.
   
 
 0.689
hoxb5
Homeobox B5b.
   
 
 0.652
LOC103468208
Homeobox domain-containing protein.
   
   0.649
LOC103472195
Homeobox A4.
   
 
 0.640
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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