STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103463284Fras1 related extracellular matrix 1b. (2058 aa)    
Predicted Functional Partners:
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 
 0.908
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.903
Fras1
Uncharacterized protein.
 
 
 0.869
npnt
Nephronectin a.
    
 0.820
LOC103480945
Uncharacterized protein.
     
  0.800
vwa2
Von Willebrand factor A domain containing 2.
      
 0.621
mfsd12
Major facilitator superfamily domain containing 12a.
     
 0.520
LOC103469301
Uncharacterized protein.
     
  0.511
LOC103463735
Uncharacterized protein.
     
  0.511
LOC103463734
Interleukin 12 receptor, beta 2a.
     
  0.511
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.