STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyhr1Cysteine/histidine-rich 1. (376 aa)    
Predicted Functional Partners:
cacybp
Calcyclin binding protein.
    
 
 0.674
zc3h3
Zinc finger CCCH-type containing 3.
      
 0.550
exosc4
Exosome component 4.
   
  
 0.516
usp5
Ubiquitin carboxyl-terminal hydrolase.
    
  0.515
usp13
Ubiquitinyl hydrolase 1.
    
  0.515
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 
 0.456
ENSPREP00000001588
Ubiquitin-conjugating enzyme E2 variant 1.
    
   0.443
LOC103467757
Transmembrane protein 189.
    
   0.443
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
    
   0.443
LOC103465507
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
   0.443
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.