STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465700Si:dkey-42p14.3. (120 aa)    
Predicted Functional Partners:
LOC103460172
Uncharacterized protein.
   
   0.741
efhb
Uncharacterized protein.
   
 
 0.737
efhc2
EF-hand domain (C-terminal) containing 2.
   
 
 0.731
efcab1
Uncharacterized protein.
    
 0.728
clg5h20orf85
Uncharacterized protein.
   
 
 0.684
lrrc34
Leucine rich repeat containing 34.
   
 
 0.679
ccdc96
DUF4201 domain-containing protein.
   
  0.667
ENSPREP00000009737
Uncharacterized protein.
   
 
 0.654
hsbp1
Heat shock factor binding protein 1a.
    
 0.639
LOC103463153
Si:ch73-60h1.1; Belongs to the protein kinase superfamily.
   
 0.633
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.