STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000007934Uncharacterized protein. (131 aa)    
Predicted Functional Partners:
adprm
ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent.
   
  
 0.684
trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.604
gad2
Glutamate decarboxylase 2.
      
 0.600
LOC103476954
Dorsal root ganglia homeobox.
   
  
 0.597
tmem220
Transmembrane protein 220.
      
 0.578
pdyn
Prodynorphin.
      
 0.503
ENSPREP00000013027
Dystrobrevin, alpha.
      
 0.497
dtnb
Dystrobrevin.
      
 0.497
LOC103471624
START domain containing 14.
      
 0.475
LOC103471783
StAR-related lipid transfer (START) domain containing 15.
      
 0.475
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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