STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1071 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b, subunit 1.
   
 0.990
sf3a2
Splicing factor 3a, subunit 2.
   
 0.986
sf3a1
Splicing factor 3a, subunit 1.
   
 0.983
phf5a
PHD finger protein 5A.
    
 0.983
sf3b2
Splicing factor 3b, subunit 2.
   
 0.981
sf3b3
Splicing factor 3b, subunit 3.
   
 0.981
sf3a3
Splicing factor 3a, subunit 3.
   
 0.980
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.979
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.975
TCERG1
Transcription elongation regulator 1.
   
 0.968
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.