STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdcd6ipProgrammed cell death 6 interacting protein. (878 aa)    
Predicted Functional Partners:
LOC103468028
Charged multivesicular body protein 4Bb.
   
 0.986
chmp4c
Charged multivesicular body protein 4C.
   
 0.986
LOC103464227
Uncharacterized protein.
   
 0.986
cep55
Centrosomal protein 55 like.
    
 
 0.983
LOC103466916
Syndecan binding protein (syntenin) 2.
    
 0.979
LOC103466144
Zgc:123278.
   
 0.966
tsg101
Tumor susceptibility 101a.
   
 0.966
LOC103470619
Multivesicular body subunit 12Bb.
     
 0.946
mvb12b
Multivesicular body subunit 12Ba.
     
 0.946
mvb12a
Uncharacterized protein.
   
 
 0.942
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.