STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471700Uncharacterized protein. (1960 aa)    
Predicted Functional Partners:
LOC103461037
RAN binding protein 2.
   
 0.576
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
   
 0.552
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.530
mis12
MIS12 kinetochore complex component.
     
 0.529
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.497
mad1l1
Mitotic arrest deficient 1 like 1.
    
 0.494
tex10
Testis expressed 10.
   
 0.489
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.485
NEK9
NIMA related kinase 9.
   
  0.482
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.468
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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