STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brd4Bromodomain containing 4. (1560 aa)    
Predicted Functional Partners:
taf7l
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 
 0.645
Cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase).
   
 
 0.605
dmap1
DNA methyltransferase 1 associated protein 1.
    
 
 0.567
e2f1
E2F transcription factor 1.
    
 
 0.558
nsd3
Nuclear receptor binding SET domain protein 3.
   
 
 0.556
jmjd6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
    
 
 0.531
LOC103475759
Transcription initiation factor TFIID subunit.
    
 
0.516
med12
Mediator complex subunit 12.
    
 
 0.512
crbn
Cereblon.
    
 
 0.500
yeats4
YEATS domain containing 4.
    
 
 0.464
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.