LOC103478475 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103478475

Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family. (382 aa)

Predicted Functional Partners:

iqcd

0.598

LOC103465781

0.589

CTCF

0.585

ptges2

0.576

c1qtnf12

0.564

lmnb1

0.518

ggps1

0.473

ENSPREP00000017636

0.466

LOC103470979

0.466

iscu

0.466

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTCF	LOC103478475	ENSPREP00000001671	ENSPREP00000007977	CCCTC-binding factor.	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.585
CTCF	lmnb1	ENSPREP00000001671	ENSPREP00000006678	CCCTC-binding factor.	Lamin B1; Belongs to the intermediate filament family.	0.636
ENSPREP00000017636	LOC103478475	ENSPREP00000017636	ENSPREP00000007977	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.466
ENSPREP00000017636	iqcd	ENSPREP00000017636	ENSPREP00000001912	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Uncharacterized protein.	0.513
ENSPREP00000017636	ptges2	ENSPREP00000017636	ENSPREP00000005602	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	Prostaglandin E synthase 2-like.	0.503
LOC103465781	LOC103478475	ENSPREP00000010326	ENSPREP00000007977	CCCTC-binding factor (zinc finger protein).	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.589
LOC103465781	lmnb1	ENSPREP00000010326	ENSPREP00000006678	CCCTC-binding factor (zinc finger protein).	Lamin B1; Belongs to the intermediate filament family.	0.640
LOC103470979	LOC103478475	ENSPREP00000031540	ENSPREP00000007977	Teneurin transmembrane protein 1.	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.466
LOC103478475	CTCF	ENSPREP00000007977	ENSPREP00000001671	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	CCCTC-binding factor.	0.585
LOC103478475	ENSPREP00000017636	ENSPREP00000007977	ENSPREP00000017636	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.466
LOC103478475	LOC103465781	ENSPREP00000007977	ENSPREP00000010326	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	CCCTC-binding factor (zinc finger protein).	0.589
LOC103478475	LOC103470979	ENSPREP00000007977	ENSPREP00000031540	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	Teneurin transmembrane protein 1.	0.466
LOC103478475	c1qtnf12	ENSPREP00000007977	ENSPREP00000031636	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	C1q and TNF related 12.	0.564
LOC103478475	ggps1	ENSPREP00000007977	ENSPREP00000011880	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.	0.473
LOC103478475	iqcd	ENSPREP00000007977	ENSPREP00000001912	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.598
LOC103478475	iscu	ENSPREP00000007977	ENSPREP00000032616	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	Iron-sulfur cluster assembly enzyme; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.466
LOC103478475	lmnb1	ENSPREP00000007977	ENSPREP00000006678	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	Lamin B1; Belongs to the intermediate filament family.	0.518
LOC103478475	ptges2	ENSPREP00000007977	ENSPREP00000005602	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	Prostaglandin E synthase 2-like.	0.576
c1qtnf12	LOC103478475	ENSPREP00000031636	ENSPREP00000007977	C1q and TNF related 12.	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.564
ggps1	LOC103478475	ENSPREP00000011880	ENSPREP00000007977	Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.	Formyl peptide receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.473