STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc86Si:ch211-217k17.7. (300 aa)    
Predicted Functional Partners:
mrto4
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
 
 0.981
nsa2
NSA2 ribosome biogenesis homolog (S. cerevisiae).
   
   0.934
nip7
NIP7 nucleolar pre-rRNA processing protein.
   
    0.849
gnl3
Guanine nucleotide binding protein-like 3 (nucleolar).
   
 
 0.805
rpf2
Ribosome production factor 2 homolog.
   
 
 0.787
gnl3l
Guanine nucleotide binding protein-like 3 (nucleolar)-like.
   
 
 0.781
rrs1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.765
llph
LLP homolog, long-term synaptic facilitation factor.
   
   0.738
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
   0.732
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
    
   0.728
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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