STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000008010DUF4509 domain-containing protein. (282 aa)    
Predicted Functional Partners:
tube1
Tubulin, epsilon 1; Belongs to the tubulin family.
    
 
 0.879
ddit3
DNA-damage-inducible transcript 3.
    
   0.789
ENSPREP00000031872
Uncharacterized protein.
   
 
 0.779
ENSPREP00000012587
Uncharacterized protein.
      
 0.589
tmem121
Transmembrane protein 121Ab.
      
 0.589
LOC103469156
Family with sequence similarity 173 member A.
      
 0.478
ttc23
Tetratricopeptide repeat domain 23.
      
 0.467
ENSPREP00000000518
CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).
   
  
 0.411
capn15
Calpain 15; Belongs to the peptidase C2 family.
      
 0.408
LOC103462017
Uncharacterized protein.
      
 0.407
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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