grip1 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

grip1

Glutamate receptor interacting protein 1. (1133 aa)

Predicted Functional Partners:

GRIA2

0.936

LOC103470494

0.936

pick1

0.848

carm1

0.786

cspg4

0.744

LOC103473556

0.694

LOC103469991

0.694

LOC103476386

0.669

gria1

0.669

ENSPREP00000023873

0.668

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000023873	GRIA2	ENSPREP00000023873	ENSPREP00000014444	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate ionotropic receptor AMPA type subunit 2.	0.852
ENSPREP00000023873	LOC103470494	ENSPREP00000023873	ENSPREP00000032547	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.852
ENSPREP00000023873	grip1	ENSPREP00000023873	ENSPREP00000008016	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor interacting protein 1.	0.668
ENSPREP00000023873	pick1	ENSPREP00000023873	ENSPREP00000025664	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Protein interacting with prkca 1.	0.761
GRIA2	ENSPREP00000023873	ENSPREP00000014444	ENSPREP00000023873	Glutamate ionotropic receptor AMPA type subunit 2.	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.852
GRIA2	LOC103469991	ENSPREP00000014444	ENSPREP00000013982	Glutamate ionotropic receptor AMPA type subunit 2.	Si:dkey-193c22.2.	0.419
GRIA2	LOC103473556	ENSPREP00000014444	ENSPREP00000008173	Glutamate ionotropic receptor AMPA type subunit 2.	Uncharacterized protein.	0.419
GRIA2	LOC103476386	ENSPREP00000014444	ENSPREP00000025986	Glutamate ionotropic receptor AMPA type subunit 2.	Uncharacterized protein.	0.857
GRIA2	cspg4	ENSPREP00000014444	ENSPREP00000018660	Glutamate ionotropic receptor AMPA type subunit 2.	Chondroitin sulfate proteoglycan 4.	0.419
GRIA2	gria1	ENSPREP00000014444	ENSPREP00000030155	Glutamate ionotropic receptor AMPA type subunit 2.	Glutamate receptor, ionotropic, AMPA 1a.	0.857
GRIA2	grip1	ENSPREP00000014444	ENSPREP00000008016	Glutamate ionotropic receptor AMPA type subunit 2.	Glutamate receptor interacting protein 1.	0.936
GRIA2	pick1	ENSPREP00000014444	ENSPREP00000025664	Glutamate ionotropic receptor AMPA type subunit 2.	Protein interacting with prkca 1.	0.981
LOC103469991	GRIA2	ENSPREP00000013982	ENSPREP00000014444	Si:dkey-193c22.2.	Glutamate ionotropic receptor AMPA type subunit 2.	0.419
LOC103469991	LOC103470494	ENSPREP00000013982	ENSPREP00000032547	Si:dkey-193c22.2.	Uncharacterized protein.	0.419
LOC103469991	grip1	ENSPREP00000013982	ENSPREP00000008016	Si:dkey-193c22.2.	Glutamate receptor interacting protein 1.	0.694
LOC103470494	ENSPREP00000023873	ENSPREP00000032547	ENSPREP00000023873	Uncharacterized protein.	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.852
LOC103470494	LOC103469991	ENSPREP00000032547	ENSPREP00000013982	Uncharacterized protein.	Si:dkey-193c22.2.	0.419
LOC103470494	LOC103473556	ENSPREP00000032547	ENSPREP00000008173	Uncharacterized protein.	Uncharacterized protein.	0.419
LOC103470494	LOC103476386	ENSPREP00000032547	ENSPREP00000025986	Uncharacterized protein.	Uncharacterized protein.	0.857
LOC103470494	cspg4	ENSPREP00000032547	ENSPREP00000018660	Uncharacterized protein.	Chondroitin sulfate proteoglycan 4.	0.419