STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubp1Upstream binding protein 1. (524 aa)    
Predicted Functional Partners:
ankrd29
Ankyrin repeat domain 29.
    
   0.661
cbfa2t2
CBFA2/RUNX1 partner transcriptional co-repressor 2.
   
  
 0.611
igf2r
Insulin-like growth factor 2 receptor.
      
 0.609
gpx7
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
  
 0.575
ESRRB
Estrogen-related receptor beta.
    
 0.539
LOC103462767
Estrogen-related receptor gamma a.
    
 0.539
LOC103457594
Uncharacterized protein.
    
 0.539
arhgef1
Rho guanine nucleotide exchange factor (GEF) 1b.
      
 0.523
cdx4
Caudal type homeobox 4.
    
 
 0.522
pid1
Phosphotyrosine interaction domain containing 1.
      
 0.520
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.